Bayesian Logistic Regression for Inhomogeneous Poisson Point Process: A Case Study of Post-Harvest Facilities in Sidenreng Rappang

Ahmad Husain, Marwan Sam, Sri Rezki Wahdania Jamaluddin

Abstract


Understanding the spatial distribution of post-harvest infrastructure is crucial for improving the efficiency and resilience of agricultural supply chains, particularly in major food-producing regions. This study aims to extend the estimating equations based on the logistic regression likelihood within the Bayesian framework to model the spatial intensity of an Inhomogeneous Poisson Point Process (IPP). The proposed approach integrates prior information into the logistic regression likelihood by constructing posterior distributions, enabling a more comprehensive inference by quantifying parameter uncertainty. In contrast to conventional maximum likelihood (ML) estimation, which produces only point estimates, the Bayesian method provides a probabilistic characterization of parameter estimates using the Markov Chain Monte Carlo (MCMC) approach, specifically the Gibbs Sampling algorithm, to approximate posterior distributions. The methodological framework is applied to the spatial distribution of post-harvest rice facilities in Sidenreng Rappang Regency, Indonesia. The analysis is based on georeferenced observational data obtained from local goverment records and agricultural statistics, processed usign Geographic Information System (GIS) tools and statistical software. Spatial covariates include the proportion of paddy field area per village (Z_1), rice producing area (Z_2), and distance to the nearest Bulog warehouse (Z_3 ). The results indicate that Z₁ and Z₃ significantly affect the spatial intensity of post-harvest facilities, where areas with larger paddy field proportions are more likely to host such facilities, while increasing distance from Bulog reduces the likelihood of facility presence. The posterior trace and density plots demonstrate good convergence and mixing, confirming the reliability of the Gibbs Sampling procedure. Model comparison through the Akaike Information Criterion (AIC) and likelihood values shows that the Bayesian approach yields a substantially lower AIC, ten times smaller than the ML-based logistic regression, indicating superior model fit and computational efficiency. The findings suggest that integrating Bayesian inference into the IPP logistic framework enhances model interpretability and robustness, particularly in accounting for uncertainty and prior knowledge. The study underscores the practical importance of spatial modeling for agricultural infrastructure planning and offers a flexible computational framework applicable to other spatial point pattern analyses across diverse domains.

Keywords


Bayesian; Gibbs Sampling; Inhomogeneous Poisson Point Process; Logistic Regression; Post-harvest facilities.

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References


Baddeley, A., Coeurjolly, J. F., Rubak, E., & Waagepetersen, R. (2014). Logistic regression for spatial Gibbs point processes. Biometrika, 101(2), 377–392. https://doi.org/10.1093/biomet/ast060

Baddeley, A., Jammalamadaka, A., & Nair, G. (2014). Multitype point process analysis of spines on the dendrite network of a neuron. Journal of the Royal Statistical Society. Series C: Applied Statistics, 63(5), 673–694. https://doi.org/10.1111/rssc.12054

Baddeley, A., Rubak, E., & Turner, R. (2016). Methodology and Applications with R (N. Keiding (ed.)). CHAPMAN & HALL/CRC. https://columbus.uhu.es/discovery/fulldisplay/alma991008739829404993/34CBUA_UHU:VU1

Berman, M., & Turner, T. R. (1992). Approximating Point Process Likelihoods with GLIM. Journal of the Royal Statistical Society. Series C (Applied Statistics), 41(1), 31–38. https://doi.org/10.2307/2347614

Brooks, S. P. (1998). Markov chain Monte Carlo method and its application. Journal of the Royal Statistical Society Series D: The Statistician, 47(1), 69–100. https://doi.org/10.1111/1467-9884.00117

Choiruddin, A., Aisah, Trisnisa, F., & Iriawan, N. (2021). Quantifying the Effect of Geological Factors on Distribution of Earthquake Occurrences by Inhomogeneous Cox Processes. Pure and Applied Geophysics, 178(5), 1579–1592. https://doi.org/10.1007/s00024-021-02713-2

Choiruddin, A., Coeurjolly, J. F., & Waagepetersen, R. (2021). Information criteria for inhomogeneous spatial point processes. Australian and New Zealand Journal of Statistics, 63(1), 119–143. https://doi.org/10.1111/anzs.12327

Choiruddin, A., Yuni Susanto, T., Husain, A., & Mega Kartikasari, Y. (2024). kppmenet: combining the kppm and elastic net regularization for inhomogeneous Cox point process with correlated covariates. Journal of Applied Statistics, 51(5), 993–1006. https://doi.org/10.1080/02664763.2023.2207786

Coeurjolly, J.-F., & Lavancier, F. (2019). Understanding Spatial Point Patterns Through Intensity and Conditional Intensities. In D. Coupier (Ed.), Stochastic Geometry: Modern Research Frontiers (pp. 45–85). Springer International Publishing. https://doi.org/10.1007/978-3-030-13547-8_2

Collins, K. M., & Schliep, E. M. (2025). Efficient Bayesian Inference for Spatial Point Patterns Using the Palm Likelihood. http://arxiv.org/abs/2507.17065

Dinas Tanaman Pangan dan Hortikultura. (2025). Data Produksi Padi Periode 2024-2025 Kabupaten Sidrap.

Fouskakis, D., Ntzoufras, I., & Draper, D. (2015). Power-expected-posterior priors for variable selection in gaussian linear models. Bayesian Analysis, 10(1), 75–107. https://doi.org/10.1214/14-BA887

Hasanah, A., Choiruddin, A., & Prastyo, D. D. (2022). On the modeling of traffic accident risk in Nganjuk Regency by Poisson point process on a linear network. AIP Conference Proceedings, 2639(1), 50007. https://doi.org/10.1063/5.0112861

Hug, J. E., & Paciorek, C. J. (2021). A numerically stable online implementation and exploration of WAIC through variations of the predictive density, using NIMBLE. http://arxiv.org/abs/2106.13359

Husain, A., & Choiruddin, A. (2021). Poisson and Logistic Regressions for Inhomogeneous Multivariate Point Processes: A Case Study in the Barro Colorado Island Plot. In A. Mohamed, B. W. Yap, J. M. Zain, & M. W. Berry (Eds.), Soft Computing in Data Science (pp. 301–311). Springer Singapore. https://doi.org/10.1007/978-981-16-7334-4_22

Kruschke, J. K. (2014). Doing Bayesian data analysis: A tutorial with R, JAGS, and Stan (2nd ed). Academic Press. https://doi.org/10.1016/B978-0-12-405888-0.09999-2

Lu, C., & Friel, N. (2024). Bayesian Strategies for Repulsive Spatial Point Processes. arXiv. 1–28. http://arxiv.org/abs/2404.15133

Lukman, P. A., Abdullah, S., & Rachman, A. (2021). Bayesian logistic regression and its application for hypothyroid prediction in post-radiation nasopharyngeal cancer patients. Journal of Physics: Conference Series, 1725(1). 1-9. https://doi.org/10.1088/1742-6596/1725/1/012010

McElreath, R. (2018). Statistical Rethinking. In Statistical Rethinking. https://doi.org/10.1201/9781315372495

Metrikasari, R., & Choiruddin, A. (2021). Pemodelan Risiko Gempa Bumi di Pulau Sumatera Menggunakan Model Inhomogeneous Neyman-Scott Cox Process. Jurnal Sains Dan Seni ITS, 9(2). 1-6. https://doi.org/10.12962/j23373520.v9i2.52318

Møller, J., & Rasmussen, J. G. (2022). Cox processes driven by transformed Gaussian processes on linear networks. Scandinavian Journal of Statistics, 51(3), 1288–1322. https://doi.org/10.1111/sjos.12720

Muth, C., Oravecz, Z., & Gabry, J. (2018). User-friendly Bayesian regression modeling: A tutorial with rstanarm and shinystan. The Quantitative Methods for Psychology, 14(2), 99–119. https://doi.org/10.20982/tqmp.14.2.p099

Ozgul, G., Li, X., Mahdavi, M., & Wang, C. (2025). Quantum Speedups for Markov Chain Monte Carlo Methods with Application to Optimization. Lmc. http://arxiv.org/abs/2504.03626

Panzeri, S., Clemente, A., Arnone, E., Mateu, J., & Sangalli, L. M. (2025). Spatio-temporal intensity estimation for inhomogeneous Poisson point processes on linear networks: A roughness penalty method. Spatial Statistics, 69(June), 100912. https://doi.org/10.1016/j.spasta.2025.100912

Putri, D. I., Fitriyanah, V., Choiruddin, A., & Trijoyo Purnomo, J. D. (2024). COVID-19 Death Risk in Surabaya: Modeling by Spatial Point Process. KnE Life Sciences, 2024, 206–217. https://doi.org/10.18502/kls.v8i1.15580

Susanto, T. Y., Choiruddin, A., & Purnomo, J. D. T. (2023). On the earthquake distribution modeling in sumatra by cauchy cluster process: Comparing log-linear and log-Additive intensity models. Sains Malaysiana, 52(2), 655–667. https://doi.org/10.17576/jsm-2023-5202-25

Turner, R., Berman, M., Fisher, N. I., Hardegen, A., Milne, R. K., Schuhmacher, D., & Shah, R. (2010). Spatial logistic regression and change-of-support in poisson point processes. Electronic Journal of Statistics, 4(1), 1151–1201. https://doi.org/10.1214/10-EJS581

Vishnoi, N. K. (2021). An Introduction to Hamiltonian Monte Carlo Method for Sampling. arXiv. 1–14. http://arxiv.org/abs/2108.12107

Waagepetersen, R. P. (2007). An estimating function approach to inference for inhomogeneous Neyman-Scott processes. Biometrics, 63(1), 252–258. https://doi.org/10.1111/j.1541-0420.2006.00667.x

Walker, E., & Soubeyrand, S. (2016). Hamiltonian Monte Carlo In Practice by Emily Walker Samuel Soubeyrand February 2016 Technical Report Hamiltonian Monte Carlo in practice. Springer.

Yasmirullah, S. D. P., & Iriawan, N. (2019). An Economic Growth Model Using Hierarchical Bayesian Method (D. McNair (ed.)). IntechOpen. https://doi.org/10.5772/intechopen.88650

Yuan, B., Fan, J., Liang, J., Wibisono, A., & Chen, Y. (2023). On a Class of Gibbs Sampling over Networks. Proceedings of Machine Learning Research, 195(1), 5754–5780. https://proceedings.mlr.press/v195/yuan23a.html

Zhou, X., & Wu, W. (2024). Statistical Depth in Spatial Point Process. Mathematics, 12(4).1-20. https://doi.org/10.3390/math12040595




DOI: https://doi.org/10.31764/jtam.v10i2.35956

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